Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF331

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

sample type
cell line
cell line
GM23338
sex
male
dev stage
adult
age
53 year
donor ID
ENCDO336AAA
lab
Michael Snyder, Stanford
source
Michael Snyder

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/716003cd-3ce7-41ce-b1e3-6f203b6632a0/@@download/attachment/ENCODE4%20_Snyder_ChIP-seq_BiorupterTruSeqProtocol_v1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
35222780
Reads aligned (%)
98.1
Duplicates removed (%)
43.2
Number of peaks
1442 (qval < 1E-05)

hg19

Number of total reads
35222780
Reads aligned (%)
97.5
Duplicates removed (%)
43.5
Number of peaks
1228 (qval < 1E-05)

Base call quality data from DBCLS SRA