ChIP-Atlas: SRX10477256

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: TFs and others
Antigen: ZNF331

Cell type

Cell type Class: Pluripotent stem cell
Cell type: iPS cells
NA: NA

Attributes by original data submitter

Sample

sample type: cell line
cell line: GM23338
sex: male
dev stage: adult
age: 53 year
donor ID: ENCDO336AAA
lab: Michael Snyder, Stanford
source: Michael Snyder

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: general protocol: https://www.encodeproject.org/documents/716003cd-3ce7-41ce-b1e3-6f203b6632a0/@@download/attachment/ENCODE4%20_Snyder_ChIP-seq_BiorupterTruSeqProtocol_v1.pdf

Sequencing Platform

instrument_model: Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 35222780
Reads aligned (%): 98.1
Duplicates removed (%): 43.2
Number of peaks: 1442 (qval < 1E-05)

hg19

Number of total reads: 35222780
Reads aligned (%): 97.5
Duplicates removed (%): 43.5
Number of peaks: 1228 (qval < 1E-05)

Base call quality data from DBCLS SRA